PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5275_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 163aa    MW: 19337.5 Da    PI: 10.6652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5275_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000251946330
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
         HLH  3 rahnerErrRRdriNsafeeLrellPka 30
                +  n rE+ RR r+++ f+ L +++ + 
  RrC5275_p1 19 EQRNLREKERRMRMKHLFFMLSSHVSPT 46
                5679*******************99774 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.6741665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-101683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-61884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MRRQRGREIG EGSSMSWKEQ RNLREKERRM RMKHLFFMLS SHVSPTHRLS VPQLIDHSAS  60
YMIQLKEKVN NLREKKQTLL GEVENHSEGS TSFNLPKLSI YSQGSIIKMN LIMDLNIKRV  120
MLHELVSVFE EEGAQVMISL TQSQLRYVLA RIHSYMYKYK HMR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227LREKER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676345.15e-86PREDICTED: uncharacterized protein LOC106381023
TrEMBLA0A078E1E95e-86A0A078E1E9_BRANA; BnaA06g06450D protein
STRINGfgenesh2_kg.1__1131__AT1G10586.13e-63(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.15e-64bHLH family protein